The genotype input data can either be called genotypes in binary plink format or genotype likelihoods in beagle format. It only needs the input genotype data used for the previous admixture analysis and the output of that analysis (admixture proportions and ancestral population frequencies). the result of applying ADMIXTURE, STRUCTURE, NGSadmix and similar). If you applied it to gentoype data without any missingness you also do not need to worry.ĮvalAdmix allows to evaluate the results of an admixture analysis (i.e. The bug did not affect the genotype likelihoods implementation so if you based the analyses on genotype likelihoods you do not need to worry. If you have analyses from previous versions based on genotype data with any missingness might be a good idea to re-run them after updating. When all sites have some missingness this would result in the last samples from the analyses having a correlation of nan with all other samples but might have some more subtle effects whenever there is some level of missingness. IMPORTANT: version 0.95 (updated on ) fixes a bug in the implementation for genotype data, which caused displacement of genotypes between samples when a site had missing data.
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